++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ GUIDELINES FOR USING THIS FILE 1. All text should be entered in-between the quotation marks (" ") Example: <#citation_year = " "> should be <#citation_year = "2007"> 2. Descriptions and examples for the data items are provided in the right column. 3. The entries marked by '!' are mandatory for ADIT deposition. 4. Not every data item needs to be filled in. 5. Blank spaces or carriage returns within a pair of quotation marks are ignored by the program. 6. If you need to enter more items than there is space given, you can copy and paste more options. Example: If you need to enter more than 4 structure authors, copy and paste additional <#structure_author_name = " "> into the file. 7. If you need to enter more categories than there is space given, you can copy and paste more categories. Be sure to indicate the identification number of the new category. Example: If two structural genomics centers determined a structure, they would be numbered 1 and 2: <#SG_project_id = " 1"> <#SG_project_name = "PSI "> <#full_name_of_SG_center = "Berkeley Structural Genomics Center "> <#SG_project_id = " 2"> <#SG_project_name = "PSI "> <#full_name_of_SG_center = "Joint Center for Structural Genomics "> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~START INPUT DATA BELOW~~~~~~~~~~~~~~~~~~~~~~~ ================CATEGORY 1: Contact Authors============================= Annotation staff will correspond with all contact authors provided about the deposition. Note: PI information should be always given. 1. Information about the Principal Investigator (PI). !(1, 2) (Dr./Prof./Mr./Mrs./Ms.) !(e.g. John) !(e.g. Rodgers) !(or investigator/responsible scientist) !(or commercial/government/other) !(e.g. name@host.domain.country) !(e.g. 610 Taylor Road) !(e.g. Piscataway) !(e.g. New Jersey) !(e.g. 08864) !(e.g. UNITED STATES) 2. Information about other contact authors Additional contact authors can be added by duplicating this section and increasing the ID number. (integer: e.g. 2,3,4. Number 1 is reserved for PI) ================CATEGORY 2: Structural Genomics========================= For structures from the structural genomics projects. Additional centers can be added by duplicating this section and increasing the ID number. (PSI or NPPSFA) (e.g. Berkeley Structural Genomics Center) ================CATEGORY 3: Release Status============================== The release status for the coordinates, structure_factors, and sequence Status should be chosen from one of the following: * for coordinate & structure_factor (RELEASE NOW, HOLD FOR PUBLICATION, HOLD FOR 8 WEEKS, HOLD FOR 6 MONTHS, HOLD FOR 1 YEAR) * for sequence (give either RELEASE NOW or HOLD FOR RELEASE) !(e.g. RELEASE NOW) !(e.g. RELEASE NOW) !!(only RELEASE NOW or HOLD FOR RELEASE) ================CATEGORY 4: Title======================================= Enter the title for the structure !(e.g. Crystal Structure Analysis of the B-DNA) Enter any additional features of this structure that will not be included elsewhere in the deposition ================CATEGORY 5: Authors of Structure============================ Enter authors of the deposited structures (e.g. Surname, F.M.) Additional authors can be added by duplicating this token. !(e.g. Surname, F.M.) ================CATEGORY 6: Citation Authors============================ Enter author names for the publications associated with this deposition. The primary citation is the article in which the deposited coordinates were first reported. Other related citations may also be provided. 1. For the primary citation (e.g. Surname, F.M.) ...add more if needed... 2. For related citations (if applicable) (e.g., 1, 2 ..) ...add more if needed... Authors for additional citation can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 7: Citation Article============================ Enter citation article (journal, title, year, volume, page) If the citation has not yet been published, use 'To be published' for the category 'journal_abbrev' and leave pages and volume blank. 1. For primary citation (e.g. to be published) 2. For other related citation (if applicable) (e.g. 1, 2, 3 ...) Additional citations can be added by duplicating section 2 and increasing the citation_id number. ID number should correspond to the ID of the citation authors given. ================CATEGORY 8: Molecule Names============================== Enter the names of the molecules (entities) that are in the asymmetric unit Additional names can be added by duplicating this token. NOTE: Each chemically unique molecule is called an entity. The name of molecule should be obtained from the appropriate sequence database reference, if available. Otherwise the gene name or other common name of the entity may be used. e.g. HIV-1 integrase for protein RNA Hammerhead Ribozyme for RNA !(for entity 1) (for entity 2) ================CATEGORY 9: Molecule Details============================ Enter additional information about each entity, if known. (optional) Additional information would include details such as fragment name (if applicable), mutation, and E.C. number. 1. For entity 1 (e.g. 1, 2, ...) (e.g. ligand binding domain, hairpin) (e.g. C280S) (if known: e.g. 2.7.7.7) 2. For entity 2 Additional molecule details can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 10: Genetically Manipulated Source============= Enter data in the genetically manipulated source category If the biomolecule has been genetically manipulated, describe its source and expression system here. 1. For entity 1 !(e.g. 1, 2, ...) !(e.g. Homo sapiens) (e.g. RPOD, ALKA...) (e.g. BH10 ISOLATE, K-12...) (e.g. Escherichia coli) (e.g. BL21(DE3)) (e.g. plasmid) (e.g. pET26) (any other relevant information) 2. For entity 2 Additional information can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 11: Natural Source============================= Enter data in the natural source category (if applicable) If the biomolecule was derived from a natural source, describe it here. 1. For entity 1 (e.g. 1, 2, ...) (e.g. Homo sapiens) (e.g. DH5a , BMH 71-18) (e.g. organ, tissue, cell ..) 2. For entity 2 Additional information can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 12: Synthetic Source============================= If the biomolecule has not been genetically manipulated or synthesized, describe its source here. 1. For entity 1 (e.g. 1, 2, ...) (if known) 2. For entity 2 Additional information can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 13: Keywords=================================== Enter a list of keywords that describe important features of the deposited structure. For example, beta barrel, protein-DNA complex, double helix, hydrolase, structural genomics etc. !(e.g. beta barrel) ================CATEGORY 14: Biological Assembly======================== Enter data in the biological assembly category (if applicable) Biological assembly describes the functional unit(s) present in the structure. There may be part of a biological assembly, one or more than one biological assemblies in the asymmetric unit. Case 1 * If the asymmetric unit is the same as the biological assembly nothing special needs to be noted here. Case 2 * If the asymmetric unit does not contain a complete biological unit. Please provide symmetry operations including translations required to build the biological unit. (example: The biological assembly is a hexamer generated from the dimer in the asymmetric unit by the operations: -y, x-y-1, z-1 and -x+y, -x-1, z-l.) Case 3 * If the asymmetric unit has multiple biological units Please specify how to group the contents of the asymmetric unit into biological units. (example: The biological unit is a dimer. There are 2 biological units in the asymmetric unit (chains A & B and chains C & D). Additional information can be added by duplicating this token. (unit 1) ================CATEGORY 15: Methods and Conditions===================== Enter the crystallization conditions for each crystal 1. For crystal 1: (e.g. 1, 2, ...) (e.g. vapor diffusion, hanging drop) (e.g. 7.5 ...) (e.g. 298) (in Kelvin) (e.g. PEG 4000, NaCl etc.) Additional information can be added by duplicating this section and increasing the ID number. ================CATEGORY 16: Radiation Source (experiment)============ Enter the details of the source of radiation, the X-ray generator, and the wavelength for each diffraction. 1. For experiment 1: !(e.g. 1, 2, ...) !(e.g. SYNCHROTRON, ROTATING ANODE ...) !(e.g. NSLS BEAMLINE X8C ...) (e.g. 1.502 ...) (e.g. CCD/AREA DETECTOR/IMAGE PLATE ...) (e.g. SIEMENS-NICOLET/RIGAKU RAXIS ...) (e.g. mirrors...) (e.g. 2004-11-27) (e.g. 100 for crystal 1:) (e.g. SINGLE WAVELENGTH, MAD, ...) (e.g. GRAPHITE, Ni FILTER ...) 2. For experiment 2: (e.g. 2,3, ...) Additional information can be added by duplicating this section and increasing the ID number. =====================================END==================================