++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ GUIDELINES FOR USING THIS FILE 1. All text should be entered in-between the quotation marks (" ") Example: <#citation_year = " "> should be <#citation_year = "2007"> 2. Descriptions and examples for the data items are provided in the right column. 3. The entries marked by '!' are mandatory for ADIT deposition. 4. Not every data item needs to be filled in. 5. Blank spaces or carriage returns within a pair of quotation marks are ignored by the program. 6. If you need to enter more items than there is space given, you can copy and paste more options. Example: If you need to enter more than 4 structure authors, copy and paste additional <#structure_author_name = " "> into the file. 7. If you need to enter more categories than there is space given, you can copy and paste more categories. Be sure to indicate the identification number of the new category. Example: If two structural genomics centers determined a structure, they would be numbered 1 and 2: <#SG_project_id = " 1"> <#SG_project_name = "PSI "> <#full_name_of_SG_center = "Berkeley Structural Genomics Center "> <#SG_project_id = " 2"> <#SG_project_name = "PSI "> <#full_name_of_SG_center = "Joint Center for Structural Genomics "> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~START INPUT DATA BELLOW~~~~~~~~~~~~~~~~~~~~~~~ ================CATEGORY 1: Contact Authors============================= Annotation staff will correspond with all contact authors provided about the deposition. Note: PI information should be always given. 1. Information about the Principal investigator (PI) should be given. !(MUST BE given 1) ( Dr./Prof./Mr./Mrs./Ms.) !(e.g. John) !(e.g. Rodgers) !(or investigator/responsible scientist) !(or commercial/government/other) !(e.g. name@host.domain.country) !(e.g. 610 Taylor Road) !(e.g. Piscataway) !(e.g. New Jersey) !(e.g. 08864) !(e.g. UNITED STATES) 2. Information about other contact authors (e.g. 2,3,4..) Additional contact authors can be added by duplicating this section and increasing the ID number. ================CATEGORY 2: Structure Genomics========================= For structures from the structural genomics projects. Additional centers can be added by duplicating this section and increasing the ID number. (PSI or NPPSFA) (e.g. Berkeley Structural Genomics Center) ================CATEGORY 3: Release Status============================== Enter Release Status for Coordinates, Constraints, Sequence Status should be chosen from one of the following: (RELEASE NOW, HOLD FOR RELEASE, HOLD FOR 8 WEEKS, HOLD FOR 6 MONTHS, HOLD FOR 1 YEAR) !(e.g. release now) ================CATEGORY 4: Title======================================= Enter the title for the structure !(e.g. Crystal Structure Analysis of the B-DNA) Enter any additional features of this structure that will not be included elsewhere in the deposition ================CATEGORY 5: Authors of Structure============================ Enter authors of the deposited structures (e.g. Surname, F.M.) Additional authors can be added by duplicating this token. !(e.g. Surname, F.M.) ================CATEGORY 6: Citation Authors============================ Enter author names for the publications associated with this deposition. The primary citation is the article in which the deposited coordinates were first reported. Other related citations may also be provided. 1. For the primary citation (e.g. Surname, F.M.) ...add more if needed... 2. For other related citations (if applicable) (e.g. 1, 2 ..) ...add more if needed... Authors for additional citation can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 7: Citation Article============================ Enter citation article (journal, title, year, volume, page) If the citation has not yet been published, use 'To be published' for the category 'journal_abbrev' and leave pages and volume blank. 1. For primary citation (e.g. to be published) 2. For other related citation (if applicable) (e.g. 1, 2, 3 ...) Additional citations can be added by duplicating section 2 and increasing the citation_id number. ID number should correspond to the ID of the citation authors given. ================CATEGORY 8: Molecule Names============================== Enter the names of the molecules (entities). Additional names can be added by duplicating this token. The name of molecule should be obtained from the appropriate sequence database reference, if available. Otherwise the gene name or other common name of the entity may be used. e.g. HIV-1 integrase for protein RNA Hammerhead Ribozyme for RNA The number of entities should be the same as in CATEGORY 1. !(entity 1) (entity 2) ================CATEGORY 9: Molecule Details============================ Enter additional information about each entity, if known. (optional) Additional information would include details such as fragment name (if applicable), mutation, and E.C. number. 1. For entity 1 (e.g. 1, 2, ...) (e.g. ligand binding domain, hairpin) (e.g. C280S) (if known: e.g. 2.7.7.7) 2. For entity 2 Additional molecule details can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 10: Genetically Manipulated Source============== Enter data in the genetically manipulated source category If the biomolecule has been genetically manipulated, describe its source and expression system here. 1. For entity 1 !(e.g. 1, 2, ...) !(e.g. Homo sapiens) (e.g. RPOD, ALKA...) (e.g. Escherichia coli) (e.g. BL21(DE3)) (e.g. plasmid) (e.g. pET26) (any other relevant information) 2. For entity 2 (e.g. 2,3, ...) Additional information can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 11: Natural Source============================= Enter data in the natural source category (if applicable) If the biomolecule was derived from a natural source, describe it here. 1. For entity 1 (e.g. 1, 2, ...) (e.g. Homo sapiens) (e.g. DH5a , BMH 71-18) (e.g. organ, tissue, cell ..) 2. For entity 2 Additional information can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 12: Synthetic Source============================= If the biomolecule has not been genetically manipulated or synthesized, describe its source here. 1. For entity 1 (e.g. 1, 2, ...) (if known) 2. For entity 2 Additional information can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 13: Keywords=================================== Enter a list of keywords that describe important features of the deposited structure. For example, beta barrel, protein-DNA complex, double helix, hydrolase, structural genomics etc. !(e.g. beta barrel) ================CATEGORY 14: Ensemble=================================== Enter data in category ensemble Skip this section if only one average structure has been deposited. (e.g. 200) (e.g. 20) (e.g. 20 structures for lowest energy) ================CATEGORY 15: Representative Conformers================== Enter data in category representative conformers Normally, only one of the ensemble is selected as a representative structure. (e.g. 1,2..) (e.g.lowest energy, fewest violations) Additional information can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 16: Sample Details============================= Enter a description of each NMR sample, including the solvent system used. 1. for sample 1. (e.g. 1, 2.. ) (e.g. 50mM phosphate buffer NA; 90% H2O, 10% D2O) (e.g. 90% H2O, 10% D2O ) 2. for sample 2. Additional information can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 17: Sample Conditions========================== Enter experimental conditions used for each sample. Each set of conditions is identified by a numerical code. 1. for sample 1. (e.g. 1, 2..) (e.g. 298) (in Kelvin) (e.g. ambient, 1atm) (e.g. 7.2) (e.g. 100MM KCL) 2. for sample 2. Additional information can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 18: Spectrometer=============================== Enter the details about each spectrometer used to collect data. 1. for experiment 1: (e.g. 1, 2..) (e.g. Bruker ..) (e.g. DRX) (e.g. 500, 700) 2. for experiment 2: Additional information can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 19: Experiment Type============================ Enter information for those experiments that were used to generate constraint data. For each NMR experiment, indicate which sample and which sample conditions were used for the experiment. 1. for experiment type 1: (e.g. 1, 2..) (same ID as solution_id_1 in CATEGORY 17) (same ID as conditions_id_1 in CATEGORY 18) (e.g. 3D_15N-separated_NOESY) 2. for experiment type 2: (e.g. 1, 2..) (same ID as solution_id_1 in CATEGORY 17) (same ID as conditions_id_1 in CATEGORY 18) Additional information can be added by duplicating section 2 and increasing the ID number. ================CATEGORY 20: Method and Details========================= Enter the method and details of the refinement for the deposited structure. (e.g. simulated annealing) (enter details about the NMR refinement) =====================================END==================================