pdb_extract is an online tool which assembles specific details about your experiment and experimental model from your coordinate and structure determination output files in preparation for PDB deposition. This tool will:

How to Run:

  1. Select your experimental method (X-ray, NMR or EM)
  2. Upload your fully refined coordinate file
  3. Select the file type and refinement program utilized
  4. Press the RUN button to start pdb_extract
  5. The mmCIF file(s) that you obtain should then be used as input for validation or deposition





Questions, comments, and suggestions should be sent to deposit@deposit.rcsb.org.